Class: TestEdgeData

Represents a single Biolink Model compliant instance of a subject-predicate-object edge that can be used for testing.

classDiagram class TestEdgeData TestAsset <|-- TestEdgeData TestEdgeData : association TestEdgeData : description TestEdgeData : expected_output TestEdgeData : id TestEdgeData : in_v1 TestEdgeData : input_category TestEdgeData : input_id TestEdgeData : input_name TestEdgeData : name TestEdgeData : output_category TestEdgeData : output_ids TestEdgeData : output_name TestEdgeData : predicate_id TestEdgeData : predicate_name TestEdgeData : qualifiers TestEdgeData --> Qualifier : qualifiers TestEdgeData : semantic_severity TestEdgeData --> SemanticSeverityEnum : semantic_severity TestEdgeData : skip TestEdgeData : skip_reason TestEdgeData : tags TestEdgeData : test_issue TestEdgeData --> TestIssueEnum : test_issue TestEdgeData : test_metadata TestEdgeData --> TestMetadata : test_metadata TestEdgeData : test_reference TestEdgeData : test_runner_settings TestEdgeData : well_known

Inheritance

TestEntity
- TestAsset
  - TestEdgeData

Slots

Name	Cardinality and Range	Description	Inheritance
input_id	0..1 Uriorcurie		TestAsset
input_name	0..1 String		TestAsset
input_category	0..1 ConceptCategory		TestAsset
predicate_id	0..1 PredicateType		TestAsset
predicate_name	0..1 String		TestAsset
output_ids	0..* Uriorcurie	One or more CURIEs that identify the expected output	TestAsset
output_name	0..1 String		TestAsset
output_category	0..1 ConceptCategory		TestAsset
association	0..1 AssociationCategory	Specific Biolink Model association 'category' which applies to the test asset...	TestAsset
qualifiers	0..* Qualifier	Optional qualifiers which constrain to the test asset defined knowledge state...	TestAsset
expected_output	0..1 String		TestAsset
test_issue	0..1 TestIssueEnum		TestAsset
semantic_severity	0..1 SemanticSeverityEnum		TestAsset
in_v1	0..1 Boolean		TestAsset
well_known	0..1 Boolean		TestAsset
test_reference	0..1 Uriorcurie	Document URL where original test source particulars are registered (e	TestAsset
test_metadata	0..1 TestMetadata	Test metadata describes the external provenance, cross-references and objecti...	TestAsset
skip	0..1 Boolean	Don't run this test (for a test case, any of its assets) until the issue behi...	TestAsset
skip_reason	0..1 String	Why the test is skipped, eg the issue it waits on, for the reports	TestAsset
id	1..1 Uriorcurie	A unique identifier for a Test Entity	TestEntity
name	0..1 String	A human-readable name for a Test Entity	TestEntity
description	0..1 String	A human-readable description for a Test Entity	TestEntity
tags	0..* String	One or more 'tags' slot values (inherited from TestEntity) should generally b...	TestEntity
test_runner_settings	0..* String	Scalar settings for the TestRunner, e	TestEntity

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel

Mappings

Mapping Type	Mapped Value
self	ttm:TestEdgeData
native	ttm:TestEdgeData

LinkML Source

Direct

name: TestEdgeData
description: Represents a single Biolink Model compliant instance of a subject-predicate-object
  edge that can be used for testing.
from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
is_a: TestAsset

Induced

name: TestEdgeData
description: Represents a single Biolink Model compliant instance of a subject-predicate-object
  edge that can be used for testing.
from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
is_a: TestAsset
attributes:
  input_id:
    name: input_id
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - InputID, node normalized
    - SubjectID
    rank: 1000
    alias: input_id
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: uriorcurie
  input_name:
    name: input_name
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - InputName (user choice)
    - SubjectName
    rank: 1000
    alias: input_name
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: string
  input_category:
    name: input_category
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - SubjectCategory
    rank: 1000
    alias: input_category
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - TestCase
    range: concept_category
  predicate_id:
    name: predicate_id
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Predicate
    rank: 1000
    alias: predicate_id
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - PathfinderTestAsset
    range: predicate_type
  predicate_name:
    name: predicate_name
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Query
    - Relationship
    rank: 1000
    alias: predicate_name
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - PathfinderTestAsset
    range: string
  output_ids:
    name: output_ids
    description: One or more CURIEs that identify the expected output. Any one of
      them may stand for the expected answer, eg the same chemical under its ChEBI
      and PubChem identifiers when node normalization no longer merges them into one
      concept.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - OutputID
    - ObjectID
    rank: 1000
    multivalued: true
    alias: output_ids
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: uriorcurie
  output_name:
    name: output_name
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - OutputName
    - ObjectName
    rank: 1000
    alias: output_name
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: string
  output_category:
    name: output_category
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - ObjectCategory
    rank: 1000
    alias: output_category
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - TestCase
    range: concept_category
  association:
    name: association
    description: Specific Biolink Model association 'category' which applies to the
      test asset defined knowledge statement
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: association
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: association_category
  qualifiers:
    name: qualifiers
    description: Optional qualifiers which constrain to the test asset defined knowledge
      statement. Note that this field records such qualifier slots and values as tag=value
      pairs, where the tag is the Biolink Model qualifier slot named and the value
      is an acceptable (Biolink Model enum?) value of the said qualifier slot.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    multivalued: true
    alias: qualifiers
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - PathfinderTestAsset
    - TestCase
    range: Qualifier
    inlined: true
    inlined_as_list: true
  expected_output:
    name: expected_output
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Expected Output
    rank: 1000
    alias: expected_output
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - PathfinderTestAsset
    range: string
  test_issue:
    name: test_issue
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - issue label
    rank: 1000
    alias: test_issue
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: TestIssueEnum
  semantic_severity:
    name: semantic_severity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Semantic Severity
    rank: 1000
    alias: semantic_severity
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: SemanticSeverityEnum
  in_v1:
    name: in_v1
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - In v1
    rank: 1000
    alias: in_v1
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: boolean
  well_known:
    name: well_known
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Well Known
    rank: 1000
    alias: well_known
    owner: TestEdgeData
    domain_of:
    - TestAsset
    range: boolean
  test_reference:
    name: test_reference
    description: Document URL where original test source particulars are registered
      (e.g. Github repo)
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - GitHubIssue
    rank: 1000
    alias: test_reference
    owner: TestEdgeData
    domain_of:
    - TestMetadata
    - TestAsset
    range: uriorcurie
  test_metadata:
    name: test_metadata
    description: Test metadata describes the external provenance, cross-references
      and objectives for a given test.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: test_metadata
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - TestSuite
    range: TestMetadata
    required: false
    inlined: true
  skip:
    name: skip
    description: Don't run this test (for a test case, any of its assets) until the
      issue behind it is fixed, eg one that always fails for a known reason. The Test
      Harness reports a skipped test as skipped rather than leaving it out, and can
      be told to run skipped tests anyway.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    ifabsent: 'false'
    alias: skip
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - PathfinderTestAsset
    - TestCase
    - PathfinderTestCase
    range: boolean
  skip_reason:
    name: skip_reason
    description: Why the test is skipped, eg the issue it waits on, for the reports.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: skip_reason
    owner: TestEdgeData
    domain_of:
    - TestAsset
    - PathfinderTestAsset
    - TestCase
    - PathfinderTestCase
    range: string
  id:
    name: id
    description: A unique identifier for a Test Entity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - AssetIdentifier
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: TestEdgeData
    domain_of:
    - TestEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a Test Entity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: TestEdgeData
    domain_of:
    - TestEntity
    - PathfinderPathNode
    range: string
  description:
    name: description
    description: A human-readable description for a Test Entity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: TestEdgeData
    domain_of:
    - TestEntity
    range: string
  tags:
    name: tags
    description: One or more 'tags' slot values (inherited from TestEntity) should
      generally be defined to specify TestAsset membership in a "Block List" collection
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    slot_uri: schema:additionalType
    multivalued: true
    alias: tags
    owner: TestEdgeData
    domain_of:
    - TestEntity
    range: string
  test_runner_settings:
    name: test_runner_settings
    description: Scalar settings for the TestRunner, e.g. "inferred"
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    multivalued: true
    alias: test_runner_settings
    owner: TestEdgeData
    domain_of:
    - TestEntity
    range: string
    required: false