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Class: AcceptanceTestAsset

Model derived from Jenn's test asset design and Shervin's runner JSON here as an example.

URI: ttm:AcceptanceTestAsset

classDiagram class AcceptanceTestAsset TestAsset <|-- AcceptanceTestAsset AcceptanceTestAsset : answer_informal_concept AcceptanceTestAsset : association AcceptanceTestAsset : description AcceptanceTestAsset : direction AcceptanceTestAsset --> DirectionEnum : direction AcceptanceTestAsset : expected_output AcceptanceTestAsset : expected_result AcceptanceTestAsset --> ExpectedResultsEnum : expected_result AcceptanceTestAsset : id AcceptanceTestAsset : in_v1 AcceptanceTestAsset : input_category AcceptanceTestAsset : input_id AcceptanceTestAsset : input_name AcceptanceTestAsset : must_pass_date AcceptanceTestAsset : must_pass_environment AcceptanceTestAsset --> TestEnvEnum : must_pass_environment AcceptanceTestAsset : name AcceptanceTestAsset : notes AcceptanceTestAsset : output_category AcceptanceTestAsset : output_id AcceptanceTestAsset : output_name AcceptanceTestAsset : predicate_id AcceptanceTestAsset : predicate_name AcceptanceTestAsset : qualifiers AcceptanceTestAsset --> Qualifier : qualifiers AcceptanceTestAsset : query_node AcceptanceTestAsset --> NodeEnum : query_node AcceptanceTestAsset : scientific_question AcceptanceTestAsset : semantic_severity AcceptanceTestAsset --> SemanticSeverityEnum : semantic_severity AcceptanceTestAsset : string_entry AcceptanceTestAsset : tags AcceptanceTestAsset : test_issue AcceptanceTestAsset --> TestIssueEnum : test_issue AcceptanceTestAsset : test_metadata AcceptanceTestAsset --> TestMetadata : test_metadata AcceptanceTestAsset : test_reference AcceptanceTestAsset : test_runner_settings AcceptanceTestAsset : top_level AcceptanceTestAsset : well_known

Inheritance

Slots

Name Cardinality and Range Description Inheritance
must_pass_date 0..1
Date		 The date by which this test must pass direct
must_pass_environment 0..1
TestEnvEnum		 The deployment environment within which this test must pass direct
scientific_question 0..1
String		 The full human-readable scientific question a SME would ask, which is encoded... direct
string_entry 0..1
String		 The object of the core triple to be tested direct
direction 0..1
DirectionEnum		 The direction of the expected query result triple direct
answer_informal_concept 0..1
String		 An answer that is returned from the test case, note: this must be combined wi... direct
expected_result 0..1
ExpectedResultsEnum		 The expected result of the query direct
top_level 0..1
Integer		 The answer must return in these many results direct
query_node 0..1
NodeEnum		 The node of the (templated) TRAPI query to replace direct
notes 0..1
String		 The notes of the query direct
input_id 0..1
Uriorcurie		 TestAsset
input_name 0..1
String		 TestAsset
input_category 0..1
ConceptCategory		 TestAsset
predicate_id 0..1
PredicateType		 TestAsset
predicate_name 0..1
String		 TestAsset
output_id 0..1
Uriorcurie		 TestAsset
output_name 0..1
String		 TestAsset
output_category 0..1
ConceptCategory		 TestAsset
association 0..1
AssociationCategory		 Specific Biolink Model association 'category' which applies to the test asset... TestAsset
qualifiers 0..*
Qualifier		 Optional qualifiers which constrain to the test asset defined knowledge state... TestAsset
expected_output 0..1
String		 TestAsset
test_issue 0..1
TestIssueEnum		 TestAsset
semantic_severity 0..1
SemanticSeverityEnum		 TestAsset
in_v1 0..1
Boolean		 TestAsset
well_known 0..1
Boolean		 TestAsset
test_reference 0..1
Uriorcurie		 Document URL where original test source particulars are registered (e TestAsset
test_metadata 0..1
TestMetadata		 Test metadata describes the external provenance, cross-references and objecti... TestAsset
id 1..1
Uriorcurie		 A unique identifier for a Test Entity TestEntity
name 0..1
String		 A human-readable name for a Test Entity TestEntity
description 0..1
String		 A human-readable description for a Test Entity TestEntity
tags 0..*
String		 One or more 'tags' slot values (inherited from TestEntity) should generally b... TestEntity
test_runner_settings 0..*
String		 Scalar settings for the TestRunner, e TestEntity

Usages

used by used in type used
AcceptanceTestCase test_assets range AcceptanceTestAsset

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel

Mappings

Mapping Type Mapped Value
self ttm:AcceptanceTestAsset
native ttm:AcceptanceTestAsset

LinkML Source

Direct

name: AcceptanceTestAsset
description: Model derived from Jenn's test asset design and Shervin's runner JSON
  here as an example.
from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
is_a: TestAsset
slots:
- must_pass_date
- must_pass_environment
- scientific_question
- string_entry
- direction
- answer_informal_concept
- expected_result
- top_level
- query_node
- notes

Induced

name: AcceptanceTestAsset
description: Model derived from Jenn's test asset design and Shervin's runner JSON
  here as an example.
from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
is_a: TestAsset
attributes:
  must_pass_date:
    name: must_pass_date
    description: The date by which this test must pass
    examples:
    - value: '2023-09-01'
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: must_pass_date
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: date
  must_pass_environment:
    name: must_pass_environment
    description: The deployment environment within which this test must pass.
    examples:
    - value: prod
    - value: ci
    - value: test
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: must_pass_environment
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: TestEnvEnum
  scientific_question:
    name: scientific_question
    description: The full human-readable scientific question a SME would ask, which
      is encoded into the test asset.
    examples:
    - value: What drugs may treat multiple sclerosis?
    - value: What gene is upregulated?
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: scientific_question
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: string
  string_entry:
    name: string_entry
    description: The object of the core triple to be tested
    examples:
    - value: multiple sclerosis
    - value: Castlemans
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - trapi node 2
    - disease
    rank: 1000
    alias: string_entry
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: string
  direction:
    name: direction
    description: The direction of the expected query result triple
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: direction
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: DirectionEnum
  answer_informal_concept:
    name: answer_informal_concept
    description: 'An answer that is returned from the test case, note: this must be
      combined with the expected_result to form a complete answer.  It might make
      sense to couple these in their own object instead of strictly sticking to the
      flat schema introduced by the spreadsheet here: https://docs.google.com/spreadsheets/d/1yj7zIchFeVl1OHqL_kE_pqvzNLmGml_FLbHDs-8Yvig/edit#gid=0'
    examples:
    - value: fingolimod
    - value: natalizumab
    - value: lead
    - value: great answer here
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: answer_informal_concept
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: string
  expected_result:
    name: expected_result
    description: The expected result of the query
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: expected_result
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: ExpectedResultsEnum
  top_level:
    name: top_level
    description: The answer must return in these many results
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: top_level
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: integer
  query_node:
    name: query_node
    description: The node of the (templated) TRAPI query to replace
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: query_node
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: NodeEnum
  notes:
    name: notes
    description: The notes of the query
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: notes
    owner: AcceptanceTestAsset
    domain_of:
    - AcceptanceTestAsset
    range: string
  input_id:
    name: input_id
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - InputID, node normalized
    - SubjectID
    rank: 1000
    alias: input_id
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: uriorcurie
  input_name:
    name: input_name
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - InputName (user choice)
    - SubjectName
    rank: 1000
    alias: input_name
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: string
  input_category:
    name: input_category
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - SubjectCategory
    rank: 1000
    alias: input_category
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    - TestCase
    range: concept_category
  predicate_id:
    name: predicate_id
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Predicate
    rank: 1000
    alias: predicate_id
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: predicate_type
  predicate_name:
    name: predicate_name
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Query
    - Relationship
    rank: 1000
    alias: predicate_name
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: string
  output_id:
    name: output_id
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - OutputID
    - ObjectID
    rank: 1000
    alias: output_id
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: uriorcurie
  output_name:
    name: output_name
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - OutputName
    - ObjectName
    rank: 1000
    alias: output_name
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: string
  output_category:
    name: output_category
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - ObjectCategory
    rank: 1000
    alias: output_category
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    - TestCase
    range: concept_category
  association:
    name: association
    description: Specific Biolink Model association 'category' which applies to the
      test asset defined knowledge statement
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: association
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: association_category
  qualifiers:
    name: qualifiers
    description: Optional qualifiers which constrain to the test asset defined knowledge
      statement. Note that this field records such qualifier slots and values as tag=value
      pairs, where the tag is the Biolink Model qualifier slot named and the value
      is an acceptable (Biolink Model enum?) value of the said qualifier slot.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    multivalued: true
    alias: qualifiers
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    - TestCase
    range: Qualifier
    inlined: true
    inlined_as_list: true
  expected_output:
    name: expected_output
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Expected Output
    rank: 1000
    alias: expected_output
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: string
  test_issue:
    name: test_issue
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - issue label
    rank: 1000
    alias: test_issue
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: TestIssueEnum
  semantic_severity:
    name: semantic_severity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Semantic Severity
    rank: 1000
    alias: semantic_severity
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: SemanticSeverityEnum
  in_v1:
    name: in_v1
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - In v1
    rank: 1000
    alias: in_v1
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: boolean
  well_known:
    name: well_known
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - Well Known
    rank: 1000
    alias: well_known
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    range: boolean
  test_reference:
    name: test_reference
    description: Document URL where original test source particulars are registered
      (e.g. Github repo)
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - GitHubIssue
    rank: 1000
    alias: test_reference
    owner: AcceptanceTestAsset
    domain_of:
    - TestMetadata
    - TestAsset
    range: uriorcurie
  test_metadata:
    name: test_metadata
    description: Test metadata describes the external provenance, cross-references
      and objectives for a given test.
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    alias: test_metadata
    owner: AcceptanceTestAsset
    domain_of:
    - TestAsset
    - TestSuite
    range: TestMetadata
    required: false
    inlined: true
  id:
    name: id
    description: A unique identifier for a Test Entity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    aliases:
    - AssetIdentifier
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: AcceptanceTestAsset
    domain_of:
    - TestEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a Test Entity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: AcceptanceTestAsset
    domain_of:
    - TestEntity
    range: string
  description:
    name: description
    description: A human-readable description for a Test Entity
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: AcceptanceTestAsset
    domain_of:
    - TestEntity
    range: string
  tags:
    name: tags
    description: One or more 'tags' slot values (inherited from TestEntity) should
      generally be defined to specify TestAsset membership in a "Block List" collection
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    slot_uri: schema:additionalType
    multivalued: true
    alias: tags
    owner: AcceptanceTestAsset
    domain_of:
    - TestEntity
    range: string
  test_runner_settings:
    name: test_runner_settings
    description: Scalar settings for the TestRunner, e.g. "inferred"
    from_schema: https://w3id.org/TranslatorSRI/TranslatorTestingModel
    rank: 1000
    multivalued: true
    alias: test_runner_settings
    owner: AcceptanceTestAsset
    domain_of:
    - TestEntity
    range: string
    required: false